NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10021562

Scaffold Ga0212088_10021562


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10021562 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8595
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_100215624F049375N/AMLSILIADQPLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLASTRSIYETFDGSIRWNGIVLFVGQIKIKTASDKTFEGTLYINKGNFNYEVKDLLLDRIDMGMKTFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQNRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKEVLLRSEVVEFSK
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