Basic Information | |
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Taxon OID | 3300022555 Open in IMG/M |
Scaffold ID | Ga0212088_10045456 Open in IMG/M |
Source Dataset Name | Alinen_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4843 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Lake Alinen Mustajarvi | |||||||
Coordinates | Lat. (o) | 61.5637 | Long. (o) | 22.044 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F055440 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212088_100454562 | F055440 | AGG | MNLKSLILPILCGLLILSTSFAWSAADSPKTSNQDSDSSDTLQAFKSKLSTTLIRHLDQLLNTDSSVVAIKGKTGQGNEALAFYLMFEVTGEQKFRKAAISLADQVLKDMRATKFGVLPIKEKEKPGGKTIIGGGPPALGAYASSVAYILHSEGSRNDDLKYIANVLDSYPWNEGGWWAADIDVATGESKEPMTKPSPINKSAAIAMATGIVSAYIRDIDPELSARLKQKSDKCVYTQIIPAQVKDGFWHYSLSGNDPKDKDILGYFMLTTEELMKLQRFNPDYRDAKLNAAVKEAQLFALNCIAPMTEPNTGPACATHTTRNTPSHYSLKENSKRSFQLGRILIGGGYTDEGIKILSAALEHFPSGNTGQDGALAAEPSALILSGY |
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