NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212121_10001957

Scaffold Ga0212121_10001957


Overview

Basic Information
Taxon OID3300022556 Open in IMG/M
Scaffold IDGa0212121_10001957 Open in IMG/M
Source Dataset NameKivu_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22168
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-2.0288Long. (o)29.1756Alt. (m)Depth (m)325
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038042Metagenome166Y
F065350Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0212121_1000195713F038042N/AMNMKRGPKPLGRLLIPEILQVLEQANCDLRTWTIAVRLKQIAARPSLKWETVHKYLEQMVQEHMIFKYEDSTGIVTYSRHPIVREKVLF
Ga0212121_1000195714F065350GAGVKFAEEILQRQASFEQLCSQFDWYDFKILGSFLTRLSFPNDTTTQSLHSIHTLFKSRGIAISKMTISRRLNRLTTLGLLRKLSKTNPVFYEIAKGREDLIRRIVHFKHTEETFGLVEMDSGNEKDT
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