NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000075

Scaffold Ga0212123_10000075


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000075 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)327317
Total Scaffold Genes273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)220 (80.59%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F000882Metagenome / Metatranscriptome849Y
F001932Metagenome / Metatranscriptome615Y
F005270Metagenome / Metatranscriptome406Y
F013706Metagenome / Metatranscriptome269Y
F051882Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000007514F000882GGTGGMPDMEAASLATLRELSSIIASKGYGRDLLYRDRDSHYVLLRHWKSEEARSAAQEDPDMLRCWARLGNEIQIVKVYETLIEVETDKTK
Ga0212123_10000075257F051882AGGAGGMKNAIFATIAVAVICTAGAVAQDQNQDRHDQQATSHRVRKATVRGYVRKDGDNYVVEDDRDKTRYRVQNTEAIREHEGHHVQVNARLHEDDRSLEVNKVKRLNDDEHRDH
Ga0212123_10000075267F000065GGAMTHIINKPIPKLGKAPQPPLSRPRATPDSDRAKKPPLAEPSATDQELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDAVVKWDDDGRTRLHQPSLKRV
Ga0212123_10000075268F001932AGAAGGMRSKLLLWFVLLIAGFLIGFIPQYARLQRLHQELSAATKQLGSCQSSEQLSQLRDTATMMYLEVVQKNYGKAGEHAKEFFDQAQRIGGSTGDPELQPLLRDILASRDQITGDLAKGDAAALSEIEPVLFKLEQTAKR
Ga0212123_1000007535F013706GGAGMIVSGTHARNPVEGWDISATAKAEPGEKIARARIIVNGFTEYDKTFEPPINGWQQQLLQRGQYPGNNTVEVIATSDKGEDTENEDSWS
Ga0212123_1000007550F005270GGAGGMDPRFNSASSADISGEDLASVVASLEPDQLISTKQKYHCPRRQLTRKEMILFWALRFYLVFMFGVVIYQVSTAVR
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