NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000104

Scaffold Ga0212123_10000104


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000104 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)284854
Total Scaffold Genes285 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)213 (74.74%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000297Metagenome / Metatranscriptome1348Y
F010040Metagenome / Metatranscriptome309Y
F033889Metagenome / Metatranscriptome176Y
F035442Metagenome / Metatranscriptome172Y
F045963Metagenome / Metatranscriptome152Y
F063904Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000104131F035442GGAGGMMSIFEKLQTAYIASQETYREYARNSLLAAQQLAHEFREYIGAPETYTDPEDETRRPYVRLLSFQMPDGVPVAVPPDAQADLLTREPDGFWRFAMALTLDRDVESFPKQQLAFFMRLKVHAGICHVQMLDSGFQDFRIAPPSETDKRALFDHMIEMVNRVLSAKPWEGIEKLPIGFELHHPDLPLEVPEQPLAQP
Ga0212123_10000104162F000297N/AMSYETFRVEVTRDETRADGAVNIEITAYLDRMPETDMPTRGMLTRAARGVWNSRLQFTGDFATLDEALTAIDAAYPDADHLRCYEYTVDDEFAREVAPLVKSGGKWRPSPRRTP
Ga0212123_100001042F010040GGAMIARMFLGAVLASAALAACTPFIPVKDDFGTSAAVPAGNIPPEFAEFNAYDPAINPLLADQMCATPYQPLDDKIMAAEPGRIVAERGRCATHIPFWGNGR
Ga0212123_10000104200F033889GGAGGMSLLGVTTAVILAASSGATSLSTTSTTDAGRIAANAGFLLGNAHRCGIATDRVVKAGQLIRELIKAASKDDKEQEDATDQFATFFLLTALPEQGDGKLVASCNSVTSEFQKFERHRIAGGAANPSSNKAVGNTPRPAFRLGDGE
Ga0212123_10000104229F063904GGGGGMDEKLIRMLIQYKDEFDRAPDNLSVGACGALLDLYMHRLAGWGFDEPATMGVLSAIFGIRESAGQPATLKQLHMTAALTRRTERAKPQVPAAA
Ga0212123_1000010494F045963GAGVSRRAWAVALCLYAAAAAIDFAVHLWADSQSGQDWRDPANLAVSFSAGLFWPADLIASLL
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