NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000145

Scaffold Ga0212123_10000145


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000145 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)240753
Total Scaffold Genes232 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)177 (76.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010343Metagenome / Metatranscriptome305Y
F086247Metagenome / Metatranscriptome111N
F087568Metagenome / Metatranscriptome110N
F087654Metagenome / Metatranscriptome110N
F087836Metagenome / Metatranscriptome110N
F098108Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000145111F086247AGGMMELVSFLAVGTGLLVLLLVAMRRQPSHAAGSAGELVTAKRTLESLQVGLLPAELVEQVFGRQDLAYISSIGSNKLTNLFMSERKRLALIWISQIRKQVRALKDFHVSRSRMFTHMSRWREFSIALDFAGLEIRCRVLQFLMQWRGPYAAPDFARRTALTAGRLCSILDQSLAFLTPGIPAQLGSESGADGTTL
Ga0212123_10000145217F087654GGAGGMEPIKAFTLKRDLVAEYDEEYLEMKTSDLRNKLDALSRSNFRPQSEIKEIQNSLNPIKAGDVRTKRSIYQLAYRRYILICPDDELLSIILELKSRLYHLDRNGEEIWSPRKLEAIEHAVRLHEGSNHLRVEIETLAKAIDEGRFRMRRDDDLRRDFLVFAFRANLILFLILLCVLGIFVILKVDIHSQWRKLPVLLFGACGGMLSATMQYRRQRISPGDLRIEPVQLFFRSVLGAFAAGIVTLFLQLRIVDFPVLHVGVEDGTSLTSGAQYIVAFASGFAERIFFRSTERISSKRSETQPVAQPVAQHAAARSVAKSAAAGR
Ga0212123_10000145218F087836GGAGGMKLQFFVLTLCLLAAAVFSLASQSNAQRTPKGQVHALQATSDKGGEHPGKTEISGPATVTCINAASEIPNGPQPSCYVTGPGFTGILNKGKTASLTGAGTVTLKCSGQGYMRCDARVDIPPPSK
Ga0212123_1000014531F010343AGGMRRELKWIEEPNFWGWGCSECAWVFNATGTPTGNSLDEMKQNYEQRRDEEFAAHACAEHPGAKKTS
Ga0212123_1000014569F098108GAGGMLILIAAITYCVIRFAAPGIRALVARRKAEPAMIASRIPIARPIAAPPQMLCNGCVYAHIVRGYARDEVMIACGYVFPAREVLFRVRECTDYRPKRERNRVEIANEGAVCILPLDETATDFHAIAAARDGEGEVESSYR
Ga0212123_1000014595F087568AGGAMNRSTISGLILAVIGIILFAHQDIARLMKKRTVVHAASIRRVEAAQTAEQAFPLASLLAGFLFMSGVGLVAVGAHPIVLPRQENPDSQA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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