NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000147

Scaffold Ga0212123_10000147


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000147 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)239875
Total Scaffold Genes207 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)167 (80.68%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000159Metagenome / Metatranscriptome1863Y
F000168Metagenome / Metatranscriptome1799Y
F001069Metagenome / Metatranscriptome787Y
F008313Metagenome / Metatranscriptome335Y
F015365Metagenome / Metatranscriptome255Y
F015894Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000014712F000168AGAAGMVPGMAGEKQIMTDAPAKLVQRLTEGLQRERIVPRFVDSYVVEHGRHALQVHASLYRDLLELLQREALLAMTGRALDIIYSEPLPSGRTKPQPMLRKDAAAFRRKFLAALTRQQKWSAGDALDFQTDLQMYEDLLARNSSARRSRKPFEAANHPFVDRCAFLLDSSFLEKARIAASRALNDLENLAAQITGAVLHGQETAPARLKR
Ga0212123_10000147124F015365GAGMNLYERVERVETRKKAGDPPSFEIRVSRVVPAGTGVDHIPIGPDGKPADPDAYHEELLKLERALSWASDDGHAQQDAYEKIARKQKERDEIIDATRTAFLYTFISTETRAGRVLYKYSMAPNPAYKPTSRTTAVLAKVHGFVWIDPVAGQIARVEGEITEDISIGLVLAKVYKGSRFLQERYEIQPGVWMPSFSQYDFDGRKFFSTISIHERTFYTQFHRIGPPKEALAEIRAELGKPGAAVSDP
Ga0212123_10000147132F001069GGAGMQYLPGFTVQCINPLCEARGHWLRADATGPISDDGRCPCCGDFLRNVPPPLSPRFRMRPRPLTARPPLRPRPR
Ga0212123_10000147170F008313N/AMTAALILAFASAALVQFAVSQWRMIWLTTANQPLSEALHAATGVEAENIGPNDFGALLGLCDELSPRIKKTTPWLREVRGYYSIVAKLENACHSIQPAVAAWAASEMKTCSRYVAVVLDQNLSLELDTRAAVRSI
Ga0212123_10000147200F000159AGGAMKFNSILRSAALVAALACTLPLLAKPITKTINITRSAKIGKADLQAGEYRLMIDGNKATVQRGNQVLAESEGRWEDRATKSSNDSVLIGENGQVKEVRFSGKARVFVFSE
Ga0212123_1000014774F015894GGAGMAEGSSSGNSSSSKSLMWMMIALFVGLGLLLAGGLFVAGRVVRSLGLSAARAKDTVRTPEGTFRLQKEAEVGPGLPVYPRASLVVPDDDAAAAAIKQAQNGIETSIYHTTDLRDYVDTWYTGHLSPEFTRHSPGDKSGPTILSDAHVSDEDITFVAERDQMVRVVSLSPDSGGTRISLIRFNKSSPAADASPTPVQPAPAQQDPAQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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