NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000174

Scaffold Ga0212123_10000174


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000174 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)220158
Total Scaffold Genes231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (51.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024668Metagenome / Metatranscriptome205Y
F045864Metagenome / Metatranscriptome152Y
F065479Metagenome / Metatranscriptome127Y
F100524Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000174147F065479AGGAVADQPDQKQPGAMLAFQEALTQAIELWDKTPVSILDQQAVQTHALLLAMGKYITYRKEKGELESCADGSDFISRLIKDL
Ga0212123_10000174229F024668AGAAGMTAIGAKVLTVDNLGTQYRVVVRIGFPRYRGSFLTLKFGEKKPFTGFTHNGQLDLVYHEDPHLKAGQPFPLWTIQ
Ga0212123_1000017457F045864N/AMIDRQAVLDAIREFVTVHFPAITVDRLETLRAGDVIQQSLELVELVLHLEEELGIEININELGENLVVQNFGDLADELVKSERKKGEK
Ga0212123_1000017497F100524N/AMKRRLLTLACLLAGLYELVSPSKAAVFVSSENYCQVTLPDGSYVQPWYTMVPANESGVLTGARRQDYVAMVYLGVVDMKDKPHFVLDEKSLEQLDRSFFGPGLGFLDKTQKITQQGINGYRLTGRHRFNGRNYAMVVDMFFDHGLVYEVAGLSQVYENALKDDDVRGFMASFRILQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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