NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000316

Scaffold Ga0212123_10000316


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000316 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)163214
Total Scaffold Genes148 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (77.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009984Metagenome / Metatranscriptome310Y
F010344Metagenome / Metatranscriptome305Y
F010700Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000316102F010700N/AMEILVTAALCYLAVGAAFFAHPASPAAPDDFNWRRQVGVFRASLPEVLAWPLSLWRFCRTLGY
Ga0212123_10000316105F010344GAGVGGTGPATGEQMRLPTKIAIMSLCALLAGCVATAPPFGDLKSAREACNRDYPPRIGNYLPHARCVNAAIETYALPGARHPDLVRLQAEVRASLSEKVDRHRLSVSAGERRMAEADRLVAAAQREREAGNNSAASKRVAAIEEMLR
Ga0212123_1000031662F009984GGAGMMYRVVTYDRTSERMKGSLIVPPSITAKVKKIAGFKPKDDGLGEYPLDEQQARQVAKLLGFKPEPERFYYYVEPYDPPDDSGFQQEANAAR
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