NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000356

Scaffold Ga0212123_10000356


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000356 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)155482
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)111 (81.02%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y
F025531Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000356111F000323AGGAGMRKIWFAIVLLSGSFLLAQDSYPASTGQHDAKDSKGQVTVQGCVGRSSGDYVLTKQNPAMTYELEGTHKIRLRNYLGQRVEVTGSESPTMSTSSDAMNKTGSAAPVTLTVTSIRTIDKECTVRQPSAQ
Ga0212123_10000356112F000269N/AMNICSRSLRTHALVPSLLLLASVLASASEQPATKPTDLPATVIAHLPLPQATGSQMLLQKENGKQYLYVQQATKQGFMVVDVTKPEKPSLLKRTAESNQATTGNMEMVSPDVAIAEAPEKTPATLTSSSHPTETVRVLDLGDPRNPKTLETFTKVTGLLPDGGHSLMYLTNNEGLWILRYNHPSLLEPAKKKPSCDSNSEIMAMPPDCD
Ga0212123_100003563F025531GAGMIIFDCQLTSNSSDTVRVSFVQVAMNSSRDNQGPDRDVRERIVNLMQSIGKGPKKQIPAEELQKLKSAASRLDQMLKAAANADQQALTSAAARLDQLLSDIRAGKDVTSNLKRRENSGT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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