NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000480

Scaffold Ga0212123_10000480


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000480 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130771
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018414Metagenome / Metatranscriptome235Y
F031170Metagenome / Metatranscriptome183Y
F041899Metagenome / Metatranscriptome159Y
F044949Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000048024F044949AGCAGGMTNAIGAGVVLEYRFRDSFCFHVRLAELLDREMPSLIERLKIFHGEIVGITEPKFLR
Ga0212123_1000048025F018414AGGMTMRLSEAEMSSIVEAGGGKYVGVLSEIPERMESIILFISPQTRTTLGIPVSRLSVEAVREQLAESDAAFTEAGSK
Ga0212123_1000048069F031170AGGAGMGNIANENEHPDHLQLKRLLEEAKPLMLPMFPDQQKVWVAESPLAQEIKSILAKHPEYYDEVRAAVGEVFPKPKASASASGS
Ga0212123_1000048073F041899GGAMLVAIFILVVSLAALIQFAAFTWRAAFMSVATMELPEDRAKCITLNDFEEASAYEKLCPELGTRGGTKLASVSAYHSFLQFVTSIGDAILPPAAGWAQREMALCTRYATVTLAQRMERNQIVAAELSSF

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