NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000647

Scaffold Ga0212123_10000647


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000647 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108734
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (81.90%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001083Metagenome / Metatranscriptome783Y
F001247Metagenome / Metatranscriptome737Y
F008825Metagenome / Metatranscriptome327Y
F012243Metagenome / Metatranscriptome282Y
F016839Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100006472F001247AGGLKSKTWNVIANTGKQASLESGLEKKEIQKPPQISSKEFIHWLAAEGRVDDDSLRSLFKQ
Ga0212123_1000064726F012243GGAGGVRAYGTVPYFFSYAAFAVVADTVRFAVHNHPSTYYATYWITEAGYDILGILVMYEVLRTLLGTFTRAWWARLIFPSIVLIGIVMSLARTDAVPTRIVGLPHYIVAGEIAVRFMQVFVFAISVTLVPLLGLRWRQYSFGIATGFGLYATVMLLTTIKFSDFGTTFKLLWGWTSLVAYSVAVLIWIWFFSIPQKVTTSELSAPAPGVLKEYKDALRRMR
Ga0212123_1000064727F016839GGAGGMFSIILTWLIVAWGALSCIYMLRCAWRRFPKRDVDDVIPFLYPVDISLAESLLDPAAEFEFRWKLQPPQFREAQRKRMRLYLELTRRMSHNATVLVAYADAEKNSQDPRRVSLASTLQEKAVEVRLYALLTRFKLRLRLLLRSEILISKPVLPNLRTACDIDGLQTYGALKIAAAAAFVQLPPEELDSLTRNL
Ga0212123_1000064738F008825GGAGMNCVELQDSLAEVEDASTVEQRAHLMDCPACYALVRELDLIIEAAGRLQAADEPSPQVWNSITTALREEGLIRPQRATQPLVSSFSARWGAARWLVPAAAMLLVALGLYVKQQSAPRPIAEQAAVVAPMVKASDLNDDDLMQEVAVNSPAMKGQYEDNLRQVNDSIREAQGFVDESPNDADARRSLMDAYHQKSMLFEMAMDRALP
Ga0212123_100006474F001083GAGVLESLREDLAYARLNNGRRVLDVADLRQYIYEPMGRIRTTSLAIDGLYRNNNGDGQDISKSNGHNGKAHLDKIWHERDTEAGHLRDEL
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