NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000709

Scaffold Ga0212123_10000709


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000709 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103167
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (74.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002108Metagenome / Metatranscriptome592Y
F006072Metagenome / Metatranscriptome382Y
F011500Metagenome / Metatranscriptome290Y
F019893Metagenome / Metatranscriptome227Y
F054196Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000070923F019893GGAGMQMKPSAILLLLSSLQVSFFTPSVVAQKGAPVSDSPEITLHSSSNLVLVDVIALNAKSGLPDKTLMRDDFRIFDNGQAVSIKTFDSGAKFTTRPLALWFVVQCNMPGYEAKGSGLFAGQISLLTPPLKHLEKQDTVAVAHWCDDGQSKLDLLPTSDIDEAATTLEQVLVPAPDTKDHDRAGELALQKTLQQIIDATRSLVPEAVPVVIFLYGDYSGMDRSEANHFIDELLETSAVADGLRDRRSPRIWLIGEQGAVANYIAAQTGGQYLRVTPKTYAKGLEEILQQLHCRYELGFKPEALDGKRHRLRVELAAAGKNQHKGVRLRSRAAYVPVAFRYRD
Ga0212123_1000070964F006072AGGAGGVLKTAAVVLAFVSFMLFATASRAQLLPSGNVYVGVAYGDSVDVINRYTFRGWNASLEDFPFSRYTHVGVVLDGSGFYRLGIQQYNVFLGPRLSTNIGKWRPFVQAMGGAQRMTSNGTTHYPVAWDIGGGVDRKFQFLFMKHFAWRLQFDYMHTHLLSATQNDIRGSTGLVWRF
Ga0212123_1000070974F002108N/AMSQTPEPAAIEVSSASAPSETPRPFRVKLRGSVLALIRLPNRRQIRGKLHQLSTTGGLVNVEQPLDEKLQVELIFHLGETTIREKAEMMFPMWATQGWLQPFRFIDLPEERKNILRTNLLAFVQQTQE
Ga0212123_1000070975F011500GAGMEIVTPKTVRRSTRLRVQISLLVTSMDRRHSFSAQCVAVIVSPQGCGIRASQALPIETPVLLSGLPGGGSASGRVANCLPLGKDAKSFLIGVSLYNQGNVWGIADPPEDWNCLPDSGAAPNGAEDKTKKGKNAWPYNRFSGQGEAHPRGK
Ga0212123_1000070981F054196AGGAGGMRAQLPLALFALVFGALEFAGGAQEMIYLGIMNSETYPLIAGVLGVLAGGLLLAAGITLLVSSPLAPVLAQATAWISVPVFTLTGIVTHRAGWSITAVGILFPLLLVFGQRNSKNAATASKT
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