Basic Information | |
---|---|
Taxon OID | 3300022557 Open in IMG/M |
Scaffold ID | Ga0212123_10000796 Open in IMG/M |
Source Dataset Name | Paint Pots_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 96297 |
Total Scaffold Genes | 89 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 66 (74.16%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000207 | Metagenome / Metatranscriptome | 1597 | Y |
F001069 | Metagenome / Metatranscriptome | 787 | Y |
F012826 | Metagenome / Metatranscriptome | 277 | Y |
F015365 | Metagenome / Metatranscriptome | 255 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0212123_1000079635 | F015365 | N/A | MRARSLILVAGLLPAFAAISLAQEAPATAPTPPPQTEAEKAALLDLVLANQKKNDEAMNLYERVERVEMRKNALDKQTGEIKVSRVVPAGTGVDHIPIGPDGKPSDPDVYHAELLKLERALSWAADDGHAQHDAYEKIAKKQKERNDLIDATRTAFLFTFVSTETRAGRVLYKYKMEPNPAYKATTRATSIFAKVRGFVWIDREAGQIARVEGEVTGDITVGLFLAKVYKGSHFMQERYEMVPGLWMPSFSQYDFDGRRLFSSISIHERTFYGQYHRIGPPKEALAMIRAELGKPGGAVADP |
Ga0212123_1000079645 | F001069 | GGAG | MQYLPGFTVQCINPLCDARGHWLRADATGPITDDGRCPCCGDFLRNVPPPLSPRFRMRPRPLTARPPLRPRPR |
Ga0212123_1000079679 | F000207 | N/A | MKMVLASVLTTVLIVAMTLGAMFILVQATDYVTSLESPLQRAVAIGAELLLGVVLLLGTVWLATHLAVRIFAKNEPAAPGGKLA |
Ga0212123_1000079682 | F012826 | GGAG | MTVRAHMPAYESFHVFRNASVRTGVYVGVVLSIVFSGWVIVANRVPLLERFALVRNLAAVAVLGLIALIPVLRFWRMPGNLLASSLVAWVLFSLSYRVLCMRFAGLAERFSAVQIFVLGAVLYMLVVTLSWIWTIIRRARASHVSHPNHHPS |
⦗Top⦘ |