NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001081

Scaffold Ga0212123_10001081


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001081 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79602
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (60.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001371Metagenome / Metatranscriptome712Y
F012137Metagenome / Metatranscriptome283Y
F039234Metagenome / Metatranscriptome164Y
F062009Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000108116F062009GAGMTRKQWSDELDKMEGLGAVIPDADRNAFLNYLTKNLGPEKGGAKDAAKPAAKKSSNAAD
Ga0212123_1000108119F039234N/AMIALLDERFAMIYGAFKTLAGILSLGTIFSGAFSHAWCPVDVVIVSGRIEDAPRKGIIRVQLVYPKQKQKMGESGEVTVEGGSFRIQIPFLTQSRAPVLIGTLLEKCDRKPETVVVTLVEADQEGEREYDRVSLHLARNFKMADPSAYALRSAILLHGPPSVLPIR
Ga0212123_1000108153F012137N/AMFKISTIDTRSQRTLVVEGTLIGSWVAELRTTWRTASQGLGGRKLVIDLGNLTVISLEGEDAILDLMKEGAKFSRGGILTRHVLKQLRRKKQQELPRR
Ga0212123_100010819F001371N/AMPQRTEATITKTTEPYLEVGLICADRDGNRIRIDRVDRDAGTLSYHFLNDELRVQEGIQERSIEQFLAEGWYMAATGRSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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