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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10001328 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 69942 |
| Total Scaffold Genes | 73 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 67 (91.78%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001558 | Metagenome / Metatranscriptome | 671 | Y |
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F001643 | Metagenome / Metatranscriptome | 659 | Y |
| F003233 | Metagenome / Metatranscriptome | 499 | Y |
| F004823 | Metagenome / Metatranscriptome | 422 | Y |
| F006399 | Metagenome / Metatranscriptome | 374 | Y |
| F006672 | Metagenome / Metatranscriptome | 367 | Y |
| F008980 | Metagenome / Metatranscriptome | 325 | Y |
| F017708 | Metagenome | 239 | Y |
| F017965 | Metagenome / Metatranscriptome | 237 | Y |
| F080601 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000132811 | F001558 | GAGG | MLRVQTQELDGALICRLEGRFTGEGAEQVRTLVTRCDGKLELVVDLTDLMFIDAIGEEVLLFVKRLGAQFVAETSYSRDVCERLQLPFIGKRKSNMQVPGNSDGNGHRPRRR |
| Ga0212123_1000132812 | F008980 | GAGG | MMGAATRNLPEPPARDYIGRVFSQHREELEWLANFLTGDETIAAACLVDACALAESENPGFQEWVLKCACLATIRSAVQIQQRRIVQLSFAYKQRPCIHGGHTALSSDWREILVEESSVVIARLDVLCRSALVICGLEKRSADEAAVLLGIDPAGVEGAYCAAIKSLEVISCEQFQRQNDFAAVYN |
| Ga0212123_100013282 | F006672 | AGGAG | MQALDTLPGESNTSIISSIINWVCPQCGGRMSEFQREGRCRRNWLAEWEWANQTPRSLKSQRRHTGRSMR |
| Ga0212123_1000132840 | F017708 | AGGAG | MAKVIEFYIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA |
| Ga0212123_1000132845 | F001596 | AGGAG | MSWFHSSTAAVVARNYASSAEIVACFQDQRNVLGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQSDVEERAASLDFILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVCRAAVLGANCHVLTWLHERHVKPVEENHDASPLCRNAGTGAE |
| Ga0212123_1000132848 | F006399 | GGA | MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIVNLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR |
| Ga0212123_1000132849 | F017965 | AGGA | MSEEIEHRDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAESLLHRSSPRLERTATSIESW |
| Ga0212123_1000132851 | F004823 | AGGAG | MYATKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSELLLNEQDWESLKAIDSPFRRTAQHA |
| Ga0212123_1000132853 | F080601 | GGAGG | MSMQRDPRSTKNSNPETVRTSARPSSHERLNSSVTALVIEQVLAEPGVHARLSDIVRGAQLFETAITQSRSRRKPEHLC |
| Ga0212123_100013286 | F003233 | N/A | MIRRVRYDVQLVRGAPMKLRTFLVAIAILGTVLHPAAAQAKKKTTQVDAPPLEPVLSGTSMQSNAVLSDVIARKPEMPLGPQDILKSYEIAMSLVVEKTSADFSVIVRTQQANQISGEQAEYLLLQSYQIAMMQYQVLSALHDVLKHDIDEAARRQARQSLKTTSSDTVLMVPFPGSVSAYR |
| Ga0212123_1000132862 | F001643 | GGAG | MLGELMNIPTDTLIDMLYMILAGDFAVTANDATEIEQIQRELQRRGGEQRWIFQAVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |