NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001371

Scaffold Ga0212123_10001371


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001371 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68464
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (77.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F003216Metagenome / Metatranscriptome500Y
F008277Metagenome / Metatranscriptome336Y
F011162Metagenome / Metatranscriptome294Y
F016029Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000137146F011162GAGGMRIVSILSGLAVLFTTLAFAHLLHHYFLNAGEAAHSPPFLAGMGIGVVVGVFSFIGGCLLLRRGR
Ga0212123_1000137149F003216N/AMTVKNAALLALIGTILMTALLVWNFVLTFLNVLRDLVPAVTMFSSFIYAFGCFSLAVFFYLFHRAQ
Ga0212123_1000137151F016029N/AMKRVLILILTITTLAVARDKKSKAQPGPYIFTSKASAQTLKELIVQTNLREGYALDSANQFQFRFSKPAQMPVIGALFMASSACAGVSTKKVWSYTLTELNGITKVTVQPVWEYPDDYCKTQTQELIWSQRDEIAAFQAMLDKAR
Ga0212123_1000137159F008277GAGGMKNDIEQSREPNPELVECAIVEVLEIAQRQGINPADFIQLLDSGIRVSDFLAALNQLAKAKNTIDCDS
Ga0212123_1000137171F000281N/AMQNPVKERIVKLREEIAQISEANRLYLRSGKNKLDAAGDNARRLQRLQEILDELVALTDWKKL
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Institute for Fundamental Biomedical Research
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