NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212123_10001509

Scaffold Ga0212123_10001509


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001509 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64185
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (77.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002692Metagenome / Metatranscriptome536Y
F015759Metagenome / Metatranscriptome252Y
F028871Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000150915F028871GGAGGMISLMNRLADVHFGKEPSGRLVFIPFTRRGKCYFVDSKADEEKIRAFLNMYRIPNTLISFLMTPMVMVPGLILEDYGGLSPRGHRLTIALGISGFFWLSFIALALMLWVVYRAAVPGLTASLSEVAPEIKAQLISAISPQQRGLRRVALVCLLAGLILLGLALVALTGHCK
Ga0212123_1000150943F015759GGAGMALHASVELAGEDRQKCSFTMLAKATKLNKHGAAVQLSRELLVGSVVSVNNKHGTELSARVVAQLAALEGVSTYAIEFVEQDERAETFWGIIFPPNTSNA
Ga0212123_100015095F002692GAGMALIAYSVLGVLAFATLSDFRIRSLTLLILAMFAFKSWVRRKDVLHPDGDRDPE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.