NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10001635

Scaffold Ga0212123_10001635


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10001635 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60874
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (74.60%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F006442Metagenome / Metatranscriptome373Y
F087361Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000163525F000238GGAMALARASHAPRWYTIPVRVCVVTFIGTLLCFAVSLLLGILGTVAVSALRGVHPDMRIAYRLIALPMALVAGGIIFVLALVMEIRHYRQSKTLSAIERLG
Ga0212123_1000163544F087361GGAGVSKPSVLVNFLQALLAIILGNVAYFALLPSLPPAAQHHRFRVDLGTAVDFFFCVVAYGLIRTARKWR
Ga0212123_1000163562F006442GGAMDNLVFCLIAQLNLVFGVAGLIWPDKLKPFFGVLMFPWPASYRAIRLNGVIAIGAYLLVVAKLVAVGF
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