NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10002213

Scaffold Ga0212123_10002213


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002213 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48056
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005307Metagenome / Metatranscriptome405Y
F011616Metagenome / Metatranscriptome289Y
F018212Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000221339F005307GGAMDRGKAVRAALKAGVLGVFIGMIPFLGMVLTGALAVFFYRRENGVPPPTALGSRLGGAAGVVAFAINALMITIRIFIFHAQQEYIDAILKITQKFGANAADPDIQASIHNLFTPAGLVVTFFFGMIFTVVLASVGGALASLMNRPRNSRG
Ga0212123_1000221343F011616AGGVNSSAPPKPASDNKHHHRHSIYAAEATGLLVIAVVLLVFTIIRYWRYIPWSAR
Ga0212123_100022135F018212N/AMLAPAFGPLAMARAAQPGALHCLRQPVSGHPAQPAMQCHQAMAQSKPYQPPPSPVESSEASFQAVVNCCLNHDCCCRVATLEWAHPAFGLLPFLSLLIEPARTSQSTILRSSDISGHDSARAPPRS
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