NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10002344

Scaffold Ga0212123_10002344


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10002344 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46152
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (79.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F001432Metagenome / Metatranscriptome696Y
F008704Metagenome / Metatranscriptome329Y
F031846Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000234410F000175AGGVDEGRKRVLGIMAAILAARKLAQYDGGTRVPATITAIGDTVRWAEQIMQAIDERWPTKNERASN
Ga0212123_1000234423F008704AGGAGGMEFVHVFVLTSLALDRSGDVKSKNVAVTFDLFEAEDHRNKGVENGYEAFVVPCDWRENAAQSELISAMREFREVVKRMQDEALR
Ga0212123_1000234426F001432GGAGGMSLSKKYVRDGKNRIIGSITSGYDDTSSVVRDENNQIAGRTSERFRTTRDGRGNLVSINSPDPGLLIGKRK
Ga0212123_1000234442F031846GGAGMNVIDDAVSMLEGPNISEHRRKELALVRLLGVAIDVIMNTSESALDIRVATAKDMIREFKHVYPEAKEI
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