NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10003698

Scaffold Ga0212123_10003698


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10003698 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31295
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011101Metagenome / Metatranscriptome295Y
F015646Metagenome / Metatranscriptome253Y
F095814Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100036982F011101AGGAMQDQAMAFASTAFFITSIALASDTWILDSSKSNARLFHGSTANAESSNTAVGRVAGKVKLDTNDLETSIFDLSIYPADEGWEHVLSPKHTLPTSYVPDATDRTPLTFKSTRILRTGNGRLEVIGDLTLTRVERAVIATPTAGYDGPSYGGPVIYDETREITFLFPIVSAEHLSALMVPAMVQKRGVLEIVGSARVDREEFPELLSAIKETNWPAVVQDVVRNVVRNEDCHIPSTVGEDYRGVPCTETVVAATQGNNCDVPASAEEDYSRRQCTPGTGNQTTIVLDLKFLHTVTEPSAGRLLENGEAR
Ga0212123_100036983F095814AGGAMLGSIVELLLGVLLSALILLVGFCILGSMFAALRAVSRRSDCDCEQAKEIFAFGAEVTELDDRMIATGVIVMTNPENHCGL
Ga0212123_100036984F015646AGGAMKTSYFTAVVSLSCLLGFGGNAHAARNTTHSVEISDVVQIGGTTLKAGTYKVEWQGTGPAVQVSFQHNGKTVVTSPGTLKTNDDQVTQDAVVTEATGAGTSTLKEIDFGHQKEALVFDQDPGGM
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Institute for Fundamental Biomedical Research
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