NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10004270

Scaffold Ga0212123_10004270


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10004270 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27692
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (78.38%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001352Metagenome / Metatranscriptome717Y
F007233Metagenome / Metatranscriptome355Y
F015496Metagenome / Metatranscriptome254Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F047788Metagenome / Metatranscriptome149Y
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000427018F015496GGAGGVYSADLVRQICGEVVNEKDPEKAQDLMSLLQAVIKDDQEDIRIRMAFLAKKYTFISDSKAAD
Ga0212123_1000427019F044617AGGAGMSTSPQPSRQRPTVTAITAEERRKLDERVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYICIRFQDKTDFAIEFSPQIVRVGTELCDSATGDFDVIRNYYQEERE
Ga0212123_1000427020F065986GGAMSNIAKRQGRMIRKGKEVRFGSVRIDLIGPTALLHNREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRK
Ga0212123_1000427022F037842AGGAGGLKQKSVKTRGEGVEYPALISKVIRQVRFVNDDDYTALTIEFDDSTLVSFRFRASIAFSIDPELSTVEGGNIVRWRQLKTRPVVRRVARK
Ga0212123_1000427023F033134AGGAMKQEQESKQLITFSSLHIEVLGPRELGNSQQAIRGVTEFLHSIELDVRNLLRERAETSPILEGFRLRFG
Ga0212123_1000427024F007233GGAMANRKQREHQRQLNQDTFSDGIKGKVVEAVSISNELECRYISLEFGDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0212123_100042707F001352GAGGMTSRELGPEWVLSRFISSIASHQDEISELVVVARRLWPRIKAHAHREQPEKNSEEALVLATEVWESVLQSVAKTVQRSNRQNWRIMNTEAYLFGAFHHRFNRALKKERRRREIIQHLPSSGDLERLRQAHDSKVVHDLEQSIQVNEAVRRMDDWTRKVWAARQYGYSWREIAVHLGLTEPQAKLRFRYAIGRLRARLGRTA
Ga0212123_100042708F047788N/AVPISTESRRVLKQQEEFNVEEKRILDLLSRGLSQDFPNPQRAGCPDSAMLKGIALHKVPLAEADPWLDHFSSCSPCFQEFTQFRKQAVDGRRRAQLWLAAAAVLLFAVAGWLWVRTQPSVQTSATVVLDLRERSVARGENSAETKQLALEIPRTAKHLVMDLPIGSKEGSYDLALLNEAGGEVSRATGTATLEDHIVILRADIDIRNLSPGLYFLGLRQLGPEWSRYPTRVN
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