NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10004302

Scaffold Ga0212123_10004302


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10004302 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27533
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001878Metagenome / Metatranscriptome623Y
F005307Metagenome / Metatranscriptome405Y
F011616Metagenome / Metatranscriptome289Y
F042452Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000430212F005307GGAMDRSIAVRAALKAGVLGVFIWVIPLLGIVLTGALAVFFYRRENGFTLPAALGSRLGGAAGVVAFAIRALYIAIRIFVFHAQQEYTDDFLKVAQRFGANAAAPDLQASIQYLFTPAGLAIGFFFVMIVVVVLTSVGGALASLFLRPRNSRM
Ga0212123_1000430216F011616AGGVNAPVQPKPKTDNHHQDDKHEHRHPIYAAEATGLLVIAVLLLVLTIIRYWRYIPWSVR
Ga0212123_1000430218F042452AGGAGMKTRPCSSSMLIASASAVLATFFLIACQQSQQPTPAATQSTAAATKDVYVVFEGPWAFAPDPKDANSVIALAPKTKSHRDLVVQTRDNTLASGIYDLAVPARTGPAAGTVDPNILRAKIDPQSVQHVLDSKSERYAIRLPKPSAYVEATHYRSRAGSAYPPDASTEKDYVTSVSLRYSVATLTGFSLAGSPDSGTFNPLLLRVDTPTINFIIEPAHDPEPGDKCHTHEREAFHALTRLVNVTLFLDFPNDPSECHGKDAQNPRPVKAEIAPSFPSFFVRGSAGGLRQHLLAAIYFFGPIRDCEVPVIVSGG
Ga0212123_100043025F001878AGGAGMSAPSRRPEIRRRRTRAEKVAKLRKRLAAASASTDKDRLTAKLHRVGLVSPGNPLIKSV

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