NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10004911

Scaffold Ga0212123_10004911


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10004911 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24458
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000780Metagenome / Metatranscriptome895Y
F001734Metagenome / Metatranscriptome644Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000491114F001734N/AMWSRRARRRRSATEIMPSRFPSLRLVAPLVPLGVLLVALLCPLTASAQEDAPSLGDLARDVRKNKLQQPQQPPDLAHPVIDNDNLVQVMEDAKQARPVKPDKTVFSIDPSSNTLKISSPDVTCSLSFNARASSLLIKPILIEDLPLTELLKLDGPGSIQDESLQLEVLNGTDWDIREITIGLTLERKPGQNAEAAARARVIPATEGLSPVVIVERRSDVTLLYHLKAEAKPFSTTAFHENIGITPGADEDWRWSIVEAKGIRPSQWQPAPDSQPDLLFSSPSSLLPRPNDHQLAPIAPIVPDKPSFDKSPSPSATLQQ
Ga0212123_100049115F000780N/AMDRQIENAKVEAGTKSGAKQPSSYRSGHLMCRTPLWGVAGFLGCAYFAWISFSRVTRGNYDWPHDFWTAATYIVWILLLAGLALDTRCLRERLFFGLLVVNFVVGCGLTLWSDVPSGDVRAARIGTGALWAVAALVSLTTLGSAAELRKKGAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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