NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10006602

Scaffold Ga0212123_10006602


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10006602 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19195
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005986Metagenome / Metatranscriptome384Y
F010577Metagenome / Metatranscriptome302Y
F033888Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000660218F033888GGGGGMTELLRKARTTDAIARIAEYVVVTFVAVMTGVSTLRLLGILP
Ga0212123_100066024F005986GAGMRKQSTMVAVLLATCLAFAAKQETLQDLMARCDSAKVEDRPARCVEIAERQLKSADELYTAGKVDEARSALKDVVTYSEKAHDAAIQSGKRVKNTEIEFRKMAAKLRDIKRTVNFDDQEPIQATADRLEALRTELLTHMFKGK
Ga0212123_100066027F010577N/AMVLTLVNALKLLSSRSGLGMVVIGLQSLLVFMFQFSSKKDNVYNILWVLVFGFATLNILGLVARRFEPRRSNLNFGEILAITVTVVSLLLLGLEMLSLLHIFPIKIQPR
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