NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10007537

Scaffold Ga0212123_10007537


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10007537 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17244
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009834Metagenome / Metatranscriptome312Y
F010176Metagenome / Metatranscriptome307Y
F051297Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000753715F051297AGGAGMKTSYFTVVLTMTCLLGLGISAHAQDASGVVVKVPFEFVAGGKTLPAGTYSVGRLSPGIHAALIIDSKDNGTFSLVLPAVPDGDSAGHTALSFERMGDKYLLSKVETPGGVYTMLTRRAMTKLAQMNDHGVTSFSGAN
Ga0212123_1000753722F010176AGGVGFGTEILFMVMLGLVVLGPKRLHAMLGHVARAKAQLENATRGIKPQLGAELEAVHRESQTDGSHESVMDR
Ga0212123_100075377F009834N/AMMTRIESRFVKFSSTALALIVTFLTTLLLVPSGASAKDHKGKGSDNQAQVVAHIPFAGLSDVDMAMQKKANDKYYLYVQHSRDQGISIIDISKPAQPKAIGVIPWTDPAVSSRMNLTGDLAIIAESEVIPMHNITSNDDLVLWDLSNPATPRVVQSFSGVIKWLQDERNFIYVLNGDGLWVVSKPADRQPEQTGSSDSY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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