NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10007674

Scaffold Ga0212123_10007674


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10007674 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16968
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005519Metagenome / Metatranscriptome398Y
F035002Metagenome / Metatranscriptome173Y
F073169Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000767410F005519N/AMRPVAFGEALSAGARLTLFSDDKPDRFFTVIKFWMDATSGVALDLKTGVPTYQVEDEEGRTHLLIHLAIEEQNEHRWCLWRPDHAGFDSRSIFEGALVGE
Ga0212123_1000767413F035002N/ALGILSIKPVAFGEVLSAGTRLTLFSDDKPDRFFTVIKFLMDKTSGVAR
Ga0212123_100076742F073169GAGMQYFRFLPDRAKLRKEARWSGVSSVPGIGERVQPSADVGAGTVTAYFVDNGCFGVLVRLELYPDKDGPDFHFLGHELCLGSPRPKPITA
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