 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10008428 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15721 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001596 | Metagenome / Metatranscriptome | 666 | Y |
| F006278 | Metagenome / Metatranscriptome | 377 | Y |
| F010114 | Metagenome / Metatranscriptome | 308 | Y |
| F029198 | Metagenome | 189 | Y |
| F061167 | Metagenome / Metatranscriptome | 132 | Y |
| F097840 | Metagenome | 104 | Y |
| F105952 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000842811 | F105952 | GGAGG | VSTRVGATNKKRADSIGSAGPFFRDKLDSRVTVLQIERALAELGIHAKLSDIVAKARFIEDGIIQSPSCRKRGARGE |
| Ga0212123_1000842813 | F097840 | GAG | MTQLAVRTVMQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRDGHNILGVWDQNWDFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVHHA |
| Ga0212123_1000842815 | F029198 | GAGG | MDSNANSRAVRVHGEVIVLHCWACGTAHCVNLELSVPGELAHMVCSNRNCGMSMFLVNELVVDDKSRKQMTKTELNASVTYSRFWK |
| Ga0212123_1000842817 | F006278 | GAGG | MFRAEIQWLASGPTLKLEGKLVTDWAEQAKRLVTKDVLPKDLIVDLTELSFVDSVGEQLLNWLASVGAVFIAGSVYAAAVCDRLRLPPMQKMTERRKWRHGSSKESSSIKHSHSGEAF |
| Ga0212123_1000842818 | F001596 | GAG | MSWFNSSTAPVDARSHASPVEVVACFQNQRNLLGRLAFLITGDHATADQAVVQACEFTLQGNSPFRDWLLEWAKAATLTSAISRGTKAIRICEAAYQDRRCPHVEHLSQGDAAERAASLGLILGTDAQTVLTELDALCRAILVLRLAIRSSIQDCALRLNVSRAAVLGANCHAMRWLQMRQVKPVEEDHGASHAV |
| Ga0212123_1000842819 | F010114 | GAGG | MIIELNDDDTRLLYTVLLAQVQEHLSYADNSEVAERLYRLATRFERRVREVRNMTTA |
| Ga0212123_100084283 | F061167 | N/A | MRRQIFDAIVIDCAQDTLDMQHFTAKAQGLQPSLAVFLADEWGDELASGLEELGHLLTMLEDDECALLV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |