NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10020032

Scaffold Ga0212123_10020032


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10020032 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7706
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045172Metagenome153Y
F069147Metagenome124Y
F087516Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100200322F045172GGAGMKRISPISLDVLAVCALFIVSANAQSLTSVPKPSAEVVRLTKALEGEWSLNVRFEPNSATPNGLVNTGEETWRPGPGGFTLLEEEHLRMPEGDLSLLGILWWNTADKSFHGMECQNSLPYTCDVKGAQNDITMNWDPKQFVIDEIETSTTGKKSIWHEVWSDITPTSFVQTGEYGVPGGPRKRLFTIYATRVTGARSESGTYAANSVDHPTSSAADAAPELQSLAKSLGGNWTTSYDFAPGGMSPNGGTGTGEENWRTGPGGYVLMEEEHVRGPAGEMYLIALHWWDNTTKSLRGMLCNNSGPAACDFNTYSNSSLNWDGKQLTIDMGFPQNEKKMTWHEVWSGITATSFTQVGELGEVGGPLKRAVTIHGTKLAPEATSKRKGQ
Ga0212123_100200323F087516GGAGGMKMLCLCAVVLALTLANARGQSKVLTNDPLTGLPLIPATVLFKNVGNEPDKMPEAQICKSKMQGEFYSLSSPYSKNKIKLDDATAWYASHLSGFKKVQGYESGRSQIAFYNSNGTGVIFLTGNNGAQGENTDAYSVAYERYQPGISEKTITSLTQGKIVCQ
Ga0212123_100200326F069147AGGAGMLRNYVFTFSVLSSLVMGQAVPAHAADSCQPVFDALTKIATTPSHSYTTNTAVNDGKTAEAETIFANGQKYIRVRGKWMRIPVTSQDVLEQEKEKEEKGKSTCQLVRRESVNGEAAMLYSVHREYDEVKEDGQMWVSTSTGRLLRVEENVDNRGRQKTEHQSTRFEYGNVRPPM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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