NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10020879

Scaffold Ga0212123_10020879


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10020879 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7452
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000850Metagenome / Metatranscriptome861Y
F001118Metagenome / Metatranscriptome773Y
F007481Metagenome / Metatranscriptome350Y
F069109Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100208792F000850GGAMKQPELTEAGWLGPKNEMDRASHRFGKCSECHEIICVEKAVTDTQNTQSATNEMLHKAFHAHVKLKHSEDASQAA
Ga0212123_100208793F069109GAGGMPHKSKESVSRKLVWVEGQTFAGWGCAECAWLFNSLGPPSGKSLDEMKRNFLAQLSEEFASHACAEHYRVKGGEALSA
Ga0212123_100208797F007481AGGMSSSGQVHLQIREPEMRQVPKANRRLGDHVRRALNKIRKPSTAEEITELLNRELGPGDRPFQAREIAAWLRNTTDKVLRLYWLETRPRR
Ga0212123_100208798F001118GGAGMELQNLGDAELCREIAVGIEHAFSEKTGNWRVSITGSHASESWEMRVEGPNGFERSYTLSGAAGQHRPEAIRKMILQLVST
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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