NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10026830

Scaffold Ga0212123_10026830


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10026830 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6118
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000217Metagenome / Metatranscriptome1557Y
F000440Metagenome / Metatranscriptome1137Y
F009833Metagenome / Metatranscriptome312Y
F035434Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1002683010F009833GGAGGMHSPFEILKKEPAGSFRRFEPVSDLASANIRIRELTTLSPGEYVVFDHRTHHDIAVGRSSFWLDARRE
Ga0212123_100268306F000217AGGAGMTAKILTFSSHGDTTLLEYDPATADMDEVNRVIAEYEAKTGAQPFDMATGERIEKITNEEREVLMVHPIAGG
Ga0212123_100268307F035434N/AMFPGVLSLIPFLTQTRWRFVFTDMGWRWLVGEIDVPRPRQNGLLGQCLHILDPAGSALVAGEVENRVDGAEPIGQEYRTQNYLRRIVALTGATQMGNAYDLTVGKTRFHVRYRYVRRLRDLTDPQGAYEETCFYPAKKEMPKCEQIATALLQLRNNPALFDRWAAQSGAFKADGQAFRPRALIHFR
Ga0212123_100268308F000440N/AMRMQTKCTRAQRAAEYLRRVAALTGAKQDDDGTYRLTVGGTHFLVDAKFVRVISPRSESTCFSVAADLDMPSAEVVASALLQLKNNARLFEKWRDCPAHAFKANGKMFRDKYQLTRDET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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