NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10029636

Scaffold Ga0212123_10029636


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10029636 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5685
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023166Metagenome / Metatranscriptome211Y
F045947Metagenome152Y
F096099Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100296361F096099AGGAMSINLDTNDIVRMFQVRATAELKRELDEVKWWEDRVRRGLVRREHVEAYIQASKRIIRTKRHVLGFPEFPC
Ga0212123_100296364F023166AGAAGMDYSVGSRVRVKLYSGKVVEAEITAITNQSTGRKLQIVYGNVTASINPAQITEVLPI
Ga0212123_100296366F045947AGGMIQSDPEDIEQIRERIRKMSDAELRKYGRAARDLSDPKKNFGPPNPAFKIQLDEARAEWKRRHPK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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