NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10038274

Scaffold Ga0212123_10038274


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10038274 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4692
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030185Metagenome / Metatranscriptome186Y
F053411Metagenome141Y
F054383Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_100382744F054383GGAMAKELKRKRDEAKQAWENATVVMKKAEKADDFTGSKKAHDEAEKLRVEYLKAEKVSETDIDDSENPLAMSAHG
Ga0212123_100382745F030185N/AMTKKSKSEIKLGDTVRLRAQSGEIIEGRIAHLWEEKSVQMVQVASGPLVYNVPASMLVDETKSK
Ga0212123_100382748F053411GGAGMKILATAFCALNVGMLFSPAVYGQPATEQPRFQIEIRATGERGPTYTVTNLSGKRVSACVLEISSSSQRARKSKTVWDALTQGQPPIEPGASISQYLPHVVGGPLPDKVEVIAVVWVDGETFGQPVWVNNILKNRAMRASEYEDAAAILQQGLDQNWSSNQYLQAFSDKPDSGPVYTVRTALAVNQQTNHTPQVFTHTMQFLLQSFRQQSDQLRKAKPILSPAIPNNDITK
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