Scaffold Ga0212090_10000528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212090_10000528

Scaffold Ga0212090_10000528

Overview

Basic Information
Taxon OID	3300022561 Open in IMG/M
Scaffold ID	Ga0212090_10000528 Open in IMG/M
Source Dataset Name	Borup_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	91735
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (60.98%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Borup Fiord, Nunavut, Canada
Coordinates	Lat. (^o)	81.017	Long. (^o)	-81.583	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033513	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212090_1000052853	F033513	AGGAGG	MGTTSRNSSMNLGEIETRHSRDGWKDAVFVILAVILTALSIGSVTSKAAGHPTEHQFSLTVIEDPELAK

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