NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212090_10080606

Scaffold Ga0212090_10080606


Overview

Basic Information
Taxon OID3300022561 Open in IMG/M
Scaffold IDGa0212090_10080606 Open in IMG/M
Source Dataset NameBorup_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3237
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBorup Fiord, Nunavut, Canada
CoordinatesLat. (o)81.017Long. (o)-81.583Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0212090_100806062F005661AGGAGMTLTFRVAQTPGAAHVQKEFGYQSGMLTPEIVHDAARQAKVLDLQKQLRTAYNRHCDKIRTNKVEIERLTLEAIESGLKDKAEIDKYVSKAIIAAAKHDQHIVNLSQKLQHELGLIKVEGASTQTLQNIDFRQRLLLIKANHQAKGQIQTNGFQQSLKAIQASPQQAIAMQGRRANFNNYINARDFDAVPAVPGSSSGNNSAMSVGGNDKGFLGGLFDFFSGRK
Ga0212090_100806063F006886N/AMNISEFDASEFDYLNADNFAQPENQTVAKAPEVTNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPALIPSAVILIPAVGLGLRLFSLMAEGTTKLRSQLILLAVATALIAGNWDAWQAWIIANSQLLIFSLALIVIPSLL
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