NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212128_10000759

Scaffold Ga0212128_10000759


Overview

Basic Information
Taxon OID3300022563 Open in IMG/M
Scaffold IDGa0212128_10000759 Open in IMG/M
Source Dataset NameOV2_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23419
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBeatty, NV
CoordinatesLat. (o)36.96Long. (o)-116.72Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023073Metagenome211Y
F031968Metagenome181N

Sequences

Protein IDFamilyRBSSequence
Ga0212128_1000075912F031968GAGLRRAILQLLYERAVETPQSLIAGIEAREIAALLDMTAHEFAFNALYLDGKGFITNDRASNGGEYHFNAIMLTSAGIDVVEDPVEMDRHVPITPQARTHDRRRGRTRRPLT
Ga0212128_1000075926F023073GGAMTRPSWLPQALIAAAWGWVLLVSALTFWGAWEIPARMPEINEIATTHLFLFPVSLILFLSLSWIRVLHDDTEADPGSRSFGRWRATLGIWLLVFLHPVSCGLYPAAFNIDTRTVEAISQTVGTMRVGMTRAEVEKQILTLNAALPIFMGTDRGRHRARQAEVAQYLAAKDPTVRRRLWPVISRATLVFVPWRLKPPAEPDREAREQVFQRRMRASSDIGADTIRVRYGPSFAVEEIVYSSNRQLTESRGPCTVHLAVPAPPEISFPYPCPK
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