NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000489

Scaffold Ga0236341_1000489


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000489 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24355
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019784Metagenome227Y
F030373Metagenome / Metatranscriptome185Y
F058576Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_100048910F019784N/AMIHLNVFELDKIKKICEEVGAEYFVLEQNNKSGIGSILTLTYDTEVAGYPAKMTIEVSGVESW
Ga0236341_100048925F058576AGGMKLFARSGGHWLFWSGFTYLSLTAVVAFSPYSQYTMCVQLVWLVMVALPLVCNPLARWLNMKETHMFDMFKKKTSNVVPFPKQEETEHGGGDGGGYIPEPKKPSVTYYSLGMTSENRLEFKMGYSAITMNHGGVTNLIEQLETFKKQLAQYEGIEEEENV
Ga0236341_100048928F030373GAGGMMLNYNEIELMEMARDYEAMEKVALQDAEELRQLRDGERIIVPVDVEHARTMFKLASYYLSQHDKEFTLTMEM
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