Basic Information | |
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Taxon OID | 3300022591 Open in IMG/M |
Scaffold ID | Ga0236341_1003017 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Laval University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8158 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
Source Dataset Sampling Location | ||||||||
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Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F013757 | Metagenome / Metatranscriptome | 268 | Y |
F074569 | Metagenome / Metatranscriptome | 119 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0236341_100301715 | F074569 | AGGTGG | MTIKEQLLALAYEKEDEEFGSSERDEFDCLIALIEDGTIDTFEELAKYGVEQ |
Ga0236341_100301716 | F000652 | AGGA | MKTAMITTILRQEIQVPDDWEREDVLDFLGEYQSFRTAFQGVSNEDQTARIVDLMVLEEEITELGEVAYDD |
Ga0236341_100301723 | F013757 | AGGA | MLTNCVAKAKLVFNKKLQSYKLVVAFNAHKSIKADGSIKYAFPTQAKCAYVSGDLLAENLQNEIANVMPNVYKALRTNSVEFVE |
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