NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1006887

Scaffold Ga0236341_1006887


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1006887 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4505
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036591Metagenome / Metatranscriptome169Y
F037693Metagenome167Y
F042791Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10068871F036591N/ANQLKFQLEDQRNRAQAEMDMRVAQMKMMTERNTQVLLAHINNGAKIETARITSGQDDGAQAYMTEEDMAKSMEHPLQPIADAITQGNQQMANVIGQMVQTINENHNRPKQVVRGADGKIIGVQ
Ga0236341_10068873F042791N/AMFSTAFQANAFQNNAFQVYVPPPPDNNRIGGDDAWYTKEELRRIQKIQQKIAAKQCLIEKTIKDANASRKQAIRDLVAPVAKVKKTKVQLKQEVKADIPLAETEDLQRSISYLERQRDNILAAVAYRQEFTRLQEKLRILEAKRLEELDDEESVLILLH
Ga0236341_10068875F037693AGGAGMALVKVTVTCPHCKVDHEEYDQSQYDDREKYLAYWNLPFEGEEADKAWKQKLEMTPREAPTVVPDIEGHISMADGTWISSRSKHRENLKRNNCIELGNDVPTEQKKHEFSRKEQEARKRQIAEIAYAKLNY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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