NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1008591

Scaffold Ga0236341_1008591


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1008591 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003521Metagenome / Metatranscriptome481Y
F005449Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10085911F005449N/APGQGVIASAGADRYSRVVMITTAWLRKDIDNDGEEEILEVCYSGSYILYIKEVDFIPLASMCPEPIVGNFFGYSKAERLVPLQEYKTAINRAEISFALQTSTPRMGVNPEFIDAEEMQRGVSALFILDRKFDPAKHVFEFQPMQGNLGYVQDAMQRFEADTSRMLGMTNPADTMNPEVMKDGNSGYKLQLAMGPNQLMQDAMVKNCAIGLRDMIYIVWKTMIQYSDDYNIQQLADAVLPGQPFLDAKSMENFEFIDRKMINIDLALGFMSDENRLTRQQLITQAQTQFAQAMMQLDPNVPEMFDKLRRPFEDTLYALGVKHCDAYLPTKEEAMKLAQAKAQQGPSTAEQEVSSKVEMNKAKASETLMNTEFIKKKIQNVDVDNYFTSVAAQKGKISAVEMD
Ga0236341_10085912F003521GGAMKSLVKNIRDYFNRRTKATDAYKEAHVERRTLVIQNGEVARRLMLNEDFALMFNLYRFSMLERLEEAKTDEERIGNAYYVAGVRDFIDFIEKSEYLAKVALKKAET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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