Scaffold Ga0236341_1008752

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0236341_1008752

Scaffold Ga0236341_1008752

Overview

Basic Information
Taxon OID	3300022591 Open in IMG/M
Scaffold ID	Ga0236341_1008752 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Laval University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3770
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location Name	SAS2a, Kuujjuarapick, Canada
Coordinates	Lat. (^o)	55.1491	Long. (^o)	-77.4866	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078138	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_10087525	F078138	AGGAGG	VIPAMRNAHATHVDFGFLRGIIRDNPNFMPSNIDMVLERKGNFLFGEWKREDEEIKTGQKILLKELAWIHRVLLITGYVDTEPHITLIQEVLPTTGNLKVVGKSVADLISYIQNWYNDAEDDFDTWRNND

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