NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1020057

Scaffold Ga0236341_1020057


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1020057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F019636Metagenome / Metatranscriptome228Y
F070899Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10200573F019636GAGMTGRMSDGVYSRKPWQAPPEAAYPPQAYIGPFASNQERLLSQSLAANLMTGEELQKYVRPPLPQVKLFPPRFGYTDSELSVEDIIDLPRRGVQRVESDFSQTPNTTESSSRNDLGGSV
Ga0236341_10200575F070899GAGGMSNDPGLLTDSTGDGMAGAEDVALSTQRDLKTTYYNGSKPCIECGVTLNPVQSLHTETCPNCTRRKQAKLLKGRMA
Ga0236341_10200576F003439GGAMTVNNSRSQNASLDEGATDGKYRKARPNTTVIPGLGDQKVKQDRAGLHPYMNYGFINSEEVAKVNPGK
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