Basic Information | |
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Taxon OID | 3300022591 Open in IMG/M |
Scaffold ID | Ga0236341_1021829 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Laval University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1937 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
Source Dataset Sampling Location | ||||||||
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Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F009462 | Metagenome / Metatranscriptome | 317 | Y |
F024559 | Metagenome / Metatranscriptome | 205 | Y |
F063276 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0236341_10218291 | F009462 | AGGAG | MELHESVRASYKEMVIKEHEGFRLTLKKHEVLMPKGLFSIDMVQESLKDGDVVDSQTYSFFMDKAELQALAYGLTL |
Ga0236341_10218294 | F024559 | GGAGG | MINSLIKLIVGLLLIAVAVVFGPILGIWSLNTLFPVLAIPYTWQTWAAYFLLFGSLTGLRFGIKK |
Ga0236341_10218297 | F063276 | GGA | MQDTNKRKDLDFYGVVVLGMVAFAFAIYWNYTHPRMIVRYDCSIAEISPDYPIAVKEGCRKLRADNIKENLQKPK |
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