Basic Information | |
---|---|
Taxon OID | 3300022591 Open in IMG/M |
Scaffold ID | Ga0236341_1023007 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Laval University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1866 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015302 | Metagenome | 255 | Y |
F030333 | Metagenome | 185 | Y |
F034448 | Metagenome | 174 | Y |
F040990 | Metagenome | 160 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0236341_10230072 | F030333 | N/A | MVGERNPQLTVSVKTSSHYTECEPWCMCNIGNWNVTWWRDFPDIAMSVALGQGPQPETYWFANEQDALMFRLKFQ |
Ga0236341_10230073 | F034448 | N/A | MHVNNYTLPRPPEQALNQCHLVVVNDPVFRMWAMKKFCREQKLSLIWSELVDTTDVSAYFDEAAAFYFIDPADATLFRLKFK |
Ga0236341_10230074 | F015302 | GGTGG | MSRDEYYVDAAARLDTIIGGDTQHFLRLQRVKNEYDILARAVPIGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSVVDEKKYTMFLLKFNR |
Ga0236341_10230075 | F040990 | AGCAGG | MNYYYEIDPKYDGTIFGDTWRYWCMANCSPADNGKMCFKTHDEFIARSSRVWVENVNGVYQVKPDWYGMRVQVDPHEFTMVKLRAKTIKWWHDEPR |
⦗Top⦘ |