NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1043786

Scaffold Ga0236341_1043786


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1043786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1184
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006266Metagenome / Metatranscriptome377Y
F009598Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_10437861F006266N/AGIPLVGKGVVFPILNWPTYKSVDVDLRNNEKLERLISFDLGIKNDPTVISFFFRDPVEETIYLHRQVTIPHGETPDEYVHYLLDRESRDVPIALPHDAATAGRYTLTEQSVREVFEDTYGLNCIQGAILNPANDQGKVTNHKAYGINIMRIGMERGSFMINESCTEFLDEARNYAIDEHGRFSDPDDHIDSARIGILALIQGHGESVVSRANTFALRRPAPIEGKVQRI
Ga0236341_10437862F009598AGGAMLDKQNIIIENLESPPANKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIAVSNSTEPVRGIDYIAPVVSPGIDYSTAVITKCLMPQGKVNFEFERFSENDVLASQQAKDMVSYFINSKNDSFQIIRDWAQDSLLHKTGVVMVSPVREPITQYKEVE
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