NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236342_1006680

Scaffold Ga0236342_1006680


Overview

Basic Information
Taxon OID3300022592 Open in IMG/M
Scaffold IDGa0236342_1006680 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4170
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011761Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0236342_10066802F011761AGGAMAYVLNGANGEANGFTFAIASFALRAMHESQGLVNMTNVVAPTQGNQFLVPNFAPITYQNYNPNGTGGTYGTGNATVQNPSLTQTNITAIPAVAQTAFDIFYGLTTSFQLAATLGAELGDSFAEKVDQSVTSGFIGNGVTEGAVGSTTGFKATPTNVYYPQSADGFYRVLQLGALELLPSGANLNITGNIANGGVAGFTTNSVLSLVREAKQQFKVARMPGAPVIVLDSNGNVTEATAGSVGGSGSSFTRLLAELTGGAVSGPSSGGSNLSALGNELLTTGKIENVYGCMVMFTTFLQHTTRTIAGTGSTPCLVGAYFGDSAMFTVMKQGLEIKIGEVPGGLQNWLTGVGYFGAGVGDQRRGGAINIVQDV
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