NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215183_1202520

Scaffold Ga0215183_1202520


Overview

Basic Information
Taxon OID3300022596 Open in IMG/M
Scaffold IDGa0215183_1202520 Open in IMG/M
Source Dataset NameMetatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NamePanama: Bocas del Toro
CoordinatesLat. (o)9.1956Long. (o)-82.1254Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001154Metatranscriptome763Y

Sequences

Protein IDFamilyRBSSequence
Ga0215183_12025201F001154N/ALKPLGSEYLARPEKATSPGMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
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