NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0248169_100037

Scaffold Ga0248169_100037


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)197342
Total Scaffold Genes191 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)116 (60.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014361Metagenome / Metatranscriptome263Y
F015306Metagenome255Y
F016120Metagenome / Metatranscriptome249Y
F029976Metagenome / Metatranscriptome186Y
F057120Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_100037123F014361N/AMSVLGAFTTQLVNLFDELCATYPEDREIRMATEAIKGAKKINPRLILDLFVQHVYKESSQAIYNRDAVQFRQMAQHKISTQFNEMVVALSVFDKYWDTMGQANQDVIWKYLKVLCVLAEKAQKE
Ga0248169_100037151F015306N/AMLSLQPHQSPLTTSEQHGEQKKLPRFRRLDNNHISAIESLFTIHPFLKDRVEIHMPFARAAPTFRNQAIWLWPKFDKRPVGYLIFLDGFAPCIWFPERQEGLTFRWMLPPSFCALGPTVCLANILAGESVLQLEDIVVHDGEDLWSRRVFSERWEALRAFWATLPPHQPFLAFTPRVVEPITLADWPQHYNASLYWTIQADYARQPRWYWKDVVTAPAHAPQKYIAPVLKRSHDIAQLLCALCMPYRKTALPDTYELEAQDGEVLGLASIRDLSMSQRLRAHFKAKPMEGLAVEVVWNNTFRKYQIMRIMPEGTPITTIGFFHHGQSTTAPVETGF
Ga0248169_1000374F057120AGGMDSLQHLTDKIPNNILCGYFYVFFIIFAVWAALALLGGIWVFTTSKMTLGMMVSVLLNILLSFGISATSALFLYLICERALKPHAEQKAKAHL
Ga0248169_10003759F016120N/AMSLPPVHRQTIDEATAEAEARPLDYQPAQRAAYIRSMLRDIPRWAAQGESEEAIRQRVPAFVESYPELFKKIIRGQDLGPIQTMLQMLDRMAKGGISQHQASIVVGKKLVDQFVMPQLKSKP
Ga0248169_10003787F029976GAGMTWLRETPYSLHYDPVHESAREIQGNDLGQRKNVKDWAIRRRVPTVVMIDHGTVSETAKASVFDEDLINLRMLKVQSILQGNLWGFNHWGGMAYSN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.