NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_100298

Scaffold Ga0248169_100298


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_100298 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82054
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F015338Metagenome / Metatranscriptome255Y
F026556Metagenome / Metatranscriptome197Y
F026795Metagenome / Metatranscriptome196Y
F032649Metagenome / Metatranscriptome179Y
F033308Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10029832F032649GGAGMDERIEKAFAVANYTATLSNQRRIILEEYNQKLVYYTNGAAFKINSELITFIKTVIDLGYTTDAVFVDSNDLPVLIEDVQKFLNDIVFVYFESTNDYAAKYNELKRKRKIADIVEL
Ga0248169_10029842F015338AGGMALKSGKPNPLNYFNLRRVEFACPHFKYTTISKFNPSLAKSLDSWIRQNLNNRYYIGQGLELDNTNTIVYNTTIGFESEKELSFFTIACPYL
Ga0248169_10029855F033308GAGGMQNAKQITDELIHRMKTTDLNKFEIKHEVGDNWIPNGTVPFDISASKGIATFTVWAESIQDAEDQVSQYLEKDEDE
Ga0248169_10029861F026556GGAGGMTMTSALIKLTFGIAFIVIAVVFGPLVGIWSLNTLFPVLNIPFTWQTWLAFNVLFGGSLATRLKK
Ga0248169_10029863F009462N/AMLWANIEHLKQLKEMKMELHESVRDTFKSTVIKEHDGFRLTLNTHEVLSPKGLFSIDMVQESLKDGDVVDSQVYNFFMTKDEMATLASALTA
Ga0248169_10029868F026795AGGAMAKNYKDFSYFETRPDIVKLFDDLEAFHDWCRTELCEFNEAHLYNRESWQWRNFDKTRRPKKPFTGERKPYLGKNPRYNNDRISN
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